Articles

2011 Leslie Regad, Juliette Martin , Anne-Claude Camproux
Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs.
BMC Bioinformatics 2011, 12:247 		link
2010 Juliette Martin , Krishanpal Anamika, Narayanaswamy Srinivasan
Classification of Protein Kinases on the Basis of Both Kinase and Non-Kinase Regions.
PLoS ONE 5(9): e12460. 		link
Juliette Martin
Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way.
PLoS Comput Biol 6(6): e1000821. 		link
Leslie Regad, Juliette Martin, Gregory Nuel and Anne-claude Camproux
Mining protein loops using a structural alphabet and statistical exceptionality
BMC Bioinformatics 2010, 11:75.
Quoted as "highly accessed article" by the journal web site. 		link
Gregory Nuel, Leslie Regad, Juliette Martin and Anne-Claude Camproux
Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data
Algorithms for Molecular Biology 2010, 5:15.
Quoted as "highly accessed article" by the journal web site. 		link
2008 Krishanpal Anamika*, Juliette Martin*, Narayanaswamy Srinivasan
Comparative kinomics of human and chimpanzee reveals unique kinship and functional diversity generated by new domain combinations
BMC Genomics 2008, 9:625.
(*: equal contributions) 		link
Juliette Martin, Leslie Regad, Catherine Etchebest, Anne-Claude Camproux
Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes
Proteins, epub 2008 May 19;73(3):672-689.
link
Juliette Martin, Leslie Regad, Hélène Lecornet, Anne-Claude Camproux
Structural deformation upon protein-protein interaction: a structural alphabet approach.
BMC Structural Biology. 2008 Feb 28;8(1):12
 link
2007 François Rodolphe, Juliette Martin, Emmanuelle Della-Chiesa.
Theoretical description of chromosome architecture after multiple back-crossing.
Theoretical Population Biology, epub 2007 Nov 26, 2008 Mar; 73(2): 289-99.
 link
Juliette Martin, Alexandre de Brevern, Anne-Claude Camproux.
In silico local structure approach: a case study on Outer Membrane Proteins.
Proteins, epub 2007 Oct 11, 2008 Apr; 71(1):92-109.
link
2006 Juliette Martin, Jean-François Gibrat, François Rodolphe.
Analysis of an optimal hidden Markov model for secondary structure prediction.
BMC Structural Biology, 2006 Dec 13;6(1):25
link
2005 Juliette Martin, Jean-François Gibrat, François Rodolphe.
How to choose the optimal hidden Markov model for protein secondary structure prediction.
IEEE Intelligent Systems, 2005 Nov/Dec; 60(6): 19-25.
 link
Juliette Martin,  Guillaume Letellier, Antoine Marin, Jean-François Taly,  Alexandre G. de Brevern, Jean-François Gibrat.
Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.
BMC Structural Biology, 2005 Sep 15;5(1):17.
Quoted as "highly accessed article" by the journal web site. 		link
before 2005 Madeleine Duc-Dodon, Samir Hamaia, Juliette Martin, Louis Gazzolo.
Heterogeneous nuclear ribonucleoprotein A1 interferes with the binding of the human T cell leukemia virus type 1 rex regulatory protein to its response element.
J Biol Chem, 2002 May 24;277(21):18744-52.

Articles in conference proceedings

2010 Leslie Regad, Juliette Martin and Anne-Claude Camproux.
Structural-alphabet motifs in protein loop structures: from structure to function.
Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2010), Montpellier, 2010 		link
2007 Juliette Martin, Leslie Regad, Catherine Etchebest and Anne-Claude Camproux.
Inter-residue contacts analysis using local structure descriptors.
Huitièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2007), Marseille, 2007.
link
Juliette Martin, Leslie Regad, Anne-Claude Camproux, and Grégory Nuel .
Pattern statistics in sets of biological sequences.
Proceedings of Applied Stochastic Models and Data Analysis, Grèce 2007. 
to appear.
 link
2006 Leslie Regad, Juliette Martin and Anne-Claude Camproux.
Identification of non Random Motifs in Loops Using a Structural Alphabet.
Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, Toronto 2006.
 link
Leslie Regad ,Juliette Martin, Anne-Claude Camproux Identification of non random motifs in protein loops using a structural alphabet.
Septièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2006), Bordeaux, 2006.
link
2005 Juliette Martin, Jean-François Gibrat, François Rodolphe.
HMM for local protein structure.
Proceedings of Applied Stochastic Models and Data Analysis, Brest 2005. 
Editors: Jacques Janssen et Philippe Lenca.
 link

Book Chapters

2009 Juliette Martin*, Leslie Regad*, Anne-Claude Camproux, Grégory Nuel.
Finite Markov chain embedding for the exact distribution of patterns in a set of random sequences.
Advances in Data Analysis : Theory and Applications to Reliability and Inference, Data Mining, Bioinformatics, Lifetime Data and Neural Networks, 2009, Skiadas CH ed. Springer/Birkhäuser Boston. ISBN:978-0817647988.
(*: equal contribution).
2007 Cristina Benros*, Juliette Martin*, Manoj Tyagi and Alexandre G. de Brevern.
Description of the local protein structure. I. Classical approaches.
Recent Adv. In Structural Bioinformatics, de Brevern A.G. ed. Research signpost, Trivandrum, India. ISBN:978-81-308-0208-4.
(*: equal contribution).
Manoj Tyagi, Cristina Benros, Juliette Martin and Alexandre G. de Brevern.
Description of the local protein structure. II. Novel approaches.
Recent Adv. In Structural Bioinformatics., de Brevern A.G. ed. Research signpost, Trivandrum, India. ISBN:978-81-308-0208-4.

Posters and oral communications in conferences

2010 Juliette Martin.
Different structures/same interaction partners: what can we learn from promiscuous protein-protein interactions?
9th European Conference on Computational Biology (ECCB10), Ghent, Belgique, 2010. Award for the best poster (on a total of 392 posters). 		link
Gregory Nuel, Leslie Regad, Juliette Martin, Anne-Claude Camproux.
Exact distribution of a pattern in a set of random sequences.
Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2010), Montpellier, 2010. Poster. Short talk given by Gregory Nuel. 		link
Leslie Regad, Juliette Martin, Anne-Claude Camproux.
Structural-alphabet motifs in protein loop structures: from structure to function.
Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2010), Montpellier, 2010. Long talk given by Leslie Regad. 		link
2009 Leslie Regad, Juliette Martin, Anne-Claude Camproux.
Analysis of loop structure and function using structural motifs.
VIII European Symposiom of The Protein Society , Zurich (Suisse), 14-18 juin 2009.
Poster.
2008 Leslie Regad, Juliette Martin, Anne-Claude Camproux.
Extraction of important structural motifs from protein loops using statistical method and structural alphabet approach.
7th European Conference on Computational Biology (ECCB) ,Cagliari (Sardaigne-Italie), 22-28 septembre 2008.
Poster. 		link
2007 Juliette Martin, Leslie Regad, Catherine Etchebest and Anne-Claude Camproux.
Inter-residue contacts analysis using local structure descriptors.
Huitièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2007), Marseille, 10-12 juillet 2007.
Long talk. 		link
Leslie Regad, Juliette Martin, Gaëlle Debret, Grégory Nuel and Anne-Claude Camproux.
Biological features of over-represented structural motifs in protein loops.
Huitièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2007), Marseille, 10-12 july 2007.
Short talk with accompanying poster. 		link
Leslie Regad, Juliette Martin, Gaëlle Debret, Grégory Nuel and Anne-Claude Camproux.
Specificity of exceptional structural motifs within loops.
15th International Conference on Intelligent Systems for Molecular Biology (ISMB 2007)/ 6th European Conference on Computational Biology (ECCB 2007), Vienna, Austria, 21-25july 2007.
Poster. 		link
Juliette Martin, Leslie Regad, Anne-Claude Camproux, and Grégory Nuel.
Pattern statistics in sets of biological sequences.
Applied Stochastic Models and Data Analysis (ASMDA 2007), Chania, Greece, 29 may-1 june 2007.
Long talk given by Grégory Nuel. 		link
2006 Juliette Martin, Alexandre G. de Brevern, Anne-Claude Camproux.
Structural study of Outer Membrane Proteins using structural alphabet.
Septièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2006), Bordeaux, 5-7 july 2006.
Short talk with accompanying poster. 		link
Juliette Martin, Toufik Tayache, Catherine Etchebest, Anne-Claude Camproux.
Influence on long-range interactions upon local structures in proteins : analysis based on a structural alphabet.
Septièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2006), Bordeaux, 5-7 july 2006.
Poster. 		link
Leslie Regad ,Juliette Martin, Anne-Claude Camproux Identification of non random motifs in protein loops using a structural alphabet.
Septièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2006), Bordeaux, 5-7 july 2006.
Long talk given by Leslie Regad.		 link
Julien Maupetit, Frédéric Guyon, Juliette Martin,Anne-Claude Camproux, Philippe Derreumaux, Pierre Tufféry.
Assessing a new approach for protein structure modeling combining a structural alphabet local conformation prediction and greedy algorithm for reconstruction.
CASP7, 7th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction, Asilomar, USA, 26-30 Novembre, 2006.
Poster.		 link
2005 Jean-François Taly, Juliette Martin, Antoine Marin, Jean-François Gibrat.
Définition de mesures décrivant l’environnement local des acides aminés pour une application à l’évaluation des modèles structuraux.
Sixièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2005), Lyon, 6-9 july 2005.
Short talk, given by Jean-François Taly, accompanying a poster.		 link
Juliette Martin, Jean-François Taly, Jean-François Gibrat, François Rodolphe.
Choice of the optimal Hidden Markov Model for secondary structure prediction.
Sixièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2005), Lyon, 6-9 july 2005.
Short talk with accompanying poster.
 link
Juliette Martin, Jean-François Gibrat, François Rodolphe.
HMM for local protein structure.
Applied Stochastic Models and Data Analysis (ASMDA 2005), Brest, 17-20 may 2005.
Long talk with accompanying article.		 link
Juliette Martin, Jean-François Gibrat, François Rodolphe.
Prédiction de la structure locale des protéines avec des  modèles de chaînes de Markov cachées.
Colloque du Groupe de Graphisme et de Modélisation Moléculaire (GGMM 2005), Ile des Embiez, 2-4 may 2005.
Poster.
 link
2004 Juliette Martin, Jean-François Gibrat, François Rodolphe.
Hidden Markov model for  protein secondary structure prediction.
Integrative Post-Genomics (IPG’04), Lyon, 13-15 october 2004.
Poster.
 link
Juliette Martin, Jean-François Gibrat, François Rodolphe.
Hidden Markov model for protein secondary structure.
Satelite Meeting 3DSIG Structural Bioinformatics, Glasgow, 29-30 july 2004.
Presentation Laptop Session.
 link
Juliette Martin, Jean-François Gibrat, François Rodolphe.
Protein secondary structure prediction using hidden Markov models.
12th International Conference on Intelligent Systems for Molecular Biology (ISMB 2004)/ 3rd European Conference on Computational Biology (ECCB 2004), Glasgow, 31july-4 agust 2004.
Poster.
 link
Juliette Martin, Jean-François Gibrat, François Rodolphe.
Modèle de chaînes de Markov cachées pour la structure secondaire des protéines.
Cinquièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2004), Montréal, 28-30 june 2004.
Poster.
2003 Juliette Martin, Pierre Nicolas, Jean-François Gibrat.
First step toward 3D protein structure prediction with a de novo approach.
2nd European Conference on Computational Biology (ECCB 2003) / Quatrièmes Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM), Paris, 27-30 September 2003.
Poster.

Other communications

2006 Juliette Martin
Structure des protéines : prédiction bioinformatique
Lab seminar of unité de biologie du développement et de la reproduction de l’INRA of Jouy-en-Josas, 30 june 2006, Jouy-en-Josas.
Juliette Martin, Jean-François Gibrat, François Rodolphe
Prédiction de la structure locale des protéines par des modèles de chaînes de Markov cachées.
Bioinformatics meeting, association des anciens du Master MBI (ex DEA AGM2) 26, 27 january 2006, Jussieu.
 link
2004 Juliette Martin, Jean-François Gibrat, François Rodolphe.
Appariement des brins beta.
ACI Genoto3D meeting, 22 june 2004, LORIA Nancy. 		link
2003 Juliette Martin, Jean-François Gibrat, François Rodolphe.
Prédiction de novo de la structure 3D des protéines avec les HMM.
Réunion de l’intergroupe de Modélisation Moléculaire, december 2003, Jussieu.
Juliette Martin, Jean-François Gibrat, François Rodolphe.
Premiers pas vers la prédiction de novo de la structure 3D des protéines avec des HMM.
ACI Genoto3D meeting, 24 november 2003, IBCP Lyon.
 link